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2.
Nat Commun ; 11(1): 5829, 2020 11 17.
Article in English | MEDLINE | ID: covidwho-933682

ABSTRACT

A SARS-CoV2 super-spreading event occurred during carnival in a small town in Germany. Due to the rapidly imposed lockdown and its relatively closed community, this town was seen as an ideal model to investigate the infection fatality rate (IFR). Here, a 7-day seroepidemiological observational study was performed to collect information and biomaterials from a random, household-based study population. The number of infections was determined by IgG analyses and PCR testing. We found that of the 919 individuals with evaluable infection status, 15.5% (95% CI:[12.3%; 19.0%]) were infected. This is a fivefold higher rate than the reported cases for this community (3.1%). 22.2% of all infected individuals were asymptomatic. The estimated IFR was 0.36% (95% CI:[0.29%; 0.45%]) for the community and 0.35% [0.28%; 0.45%] when age-standardized to the population of the community. Participation in carnival increased both infection rate (21.3% versus 9.5%, p < 0.001) and number of symptoms (estimated relative mean increase 1.6, p = 0.007). While the infection rate here is not representative for Germany, the IFR is useful to estimate the consequences of the pandemic in places with similar healthcare systems and population characteristics. Whether the super-spreading event not only increases the infection rate but also affects the IFR requires further investigation.


Subject(s)
COVID-19/etiology , COVID-19/mortality , Adolescent , Adult , Aged , Aged, 80 and over , COVID-19/epidemiology , COVID-19/transmission , COVID-19 Testing/statistics & numerical data , Child , Comorbidity , Family Characteristics , Female , Germany/epidemiology , Humans , Immunoglobulin G/blood , Male , Middle Aged , Mortality , Polymerase Chain Reaction , Prevalence , SARS-CoV-2/genetics , Young Adult
3.
J Clin Virol ; 127: 104381, 2020 06.
Article in English | MEDLINE | ID: covidwho-102384

ABSTRACT

BACKGROUND: A novel coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), emerged in China in late 2019 and subsequently caused a pandemic. Surveillance is important to better appreciate this evolving pandemic and to longitudinally monitor the effectiveness of public health measures. OBJECTIVES: We aimed to provide a rapid, easy to establish and costeffective laboratory-based surveillance tool for SARS-CoV-2. STUDY DESIGN: We used minipools of RNA prepared from nucleic acid extractions of routine respiratory samples. We technically validated the assay and distributed the protocol within an informal network of five German university laboratories. RESULTS: We tested a total of 70 minipools resembling 700 samples shortly before the upsurge of cases in Germany from 17.02.2020 to 10.03.2020. One minipool reacted positive and after resolution one individual sample tested SARS-CoV-2 positive. This sample was from a hospitalized patient not suspected of having contracted SARS-CoV-2. CONCLUSIONS: Our approach of a laboratory-based surveillance for SARSCoV-2 using minipools proved its concept is easily adaptable and resource-saving. It might assist not only public health laboratories in SARS-CoV-2 surveillance.


Subject(s)
Coronavirus Infections/diagnosis , Epidemiological Monitoring , Molecular Diagnostic Techniques/methods , Pneumonia, Viral/diagnosis , RNA, Viral/isolation & purification , Reverse Transcriptase Polymerase Chain Reaction , Betacoronavirus/isolation & purification , Bronchoalveolar Lavage Fluid/virology , COVID-19 , Germany/epidemiology , Humans , Pandemics , Pharynx/virology , Prospective Studies , SARS-CoV-2 , Sputum/virology
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